IL_8Z71_066
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8Z71|1|2|C|1274, 8Z71|1|2|U|1432, 8Z71|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z71_066 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.1423
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8Z71|1|2|U|1272
8Z71|1|2|G|1273
8Z71|1|2|C|1274
8Z71|1|2|A|1275
8Z71|1|2|U|1276
8Z71|1|2|G|1277
8Z71|1|2|G|1278
*
8Z71|1|2|U|1430
8Z71|1|2|C|1431
8Z71|1|2|U|1432
8Z71|1|2|G|1433
8Z71|1|2|U|1434
8Z71|1|2|G|1435
8Z71|1|2|A|1436
8Z71|1|2|U|1437
8Z71|1|2|G|1438
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SC
- Small ribosomal subunit protein eS10A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain s
- Transfer RNA; tRNA
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