IL_8Z71_103

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8Z71|1|A|U|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z71_103 not in the Motif Atlas

Homologous match to IL_8C3A_013

Geometric discrepancy: 0.1353

The information below is about IL_8C3A_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8Z71|1|A|G|189
8Z71|1|A|U|190
8Z71|1|A|U|191
*
8Z71|1|A|A|204
8Z71|1|A|C|205

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4A

Chain a

Large ribosomal subunit protein uL24A