IL_8Z71_107
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8Z71|1|A|U|534, 8Z71|1|A|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z71_107 not in the Motif Atlas
- Homologous match to IL_8P9A_248
- Geometric discrepancy: 0.1274
- The information below is about IL_8P9A_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25001.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8Z71|1|A|G|531
8Z71|1|A|A|532
8Z71|1|A|A|533
8Z71|1|A|U|534
8Z71|1|A|G|535
8Z71|1|A|U|536
8Z71|1|A|A|537
8Z71|1|A|G|538
*
8Z71|1|A|U|553
8Z71|1|A|A|554
8Z71|1|A|U|555
8Z71|1|A|U|556
8Z71|1|A|A|557
8Z71|1|A|U|558
8Z71|1|A|A|559
8Z71|1|A|G|560
8Z71|1|A|C|561
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain O
- Large ribosomal subunit protein eL14A
- Chain U
- Large ribosomal subunit protein eL20A
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