IL_8Z71_129

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUCCGGG*CUUGA

Length

12 nucleotides

Bulged bases

8Z71|1|A|U|1015

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Z71|1|A|U|1014
8Z71|1|A|U|1015
8Z71|1|A|C|1016
8Z71|1|A|C|1017
8Z71|1|A|G|1018
8Z71|1|A|G|1019
8Z71|1|A|G|1020
*
8Z71|1|A|C|1032
8Z71|1|A|U|1033
8Z71|1|A|U|1034
8Z71|1|A|G|1035
8Z71|1|A|A|1036

Current chains

Chain A

25S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL16

Chain M

Large ribosomal subunit protein uL5B