IL_8Z71_223
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z71_223 not in the Motif Atlas
- Homologous match to IL_8P9A_365
- Geometric discrepancy: 0.125
- The information below is about IL_8P9A_365
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.1
- Basepair signature
- cWW-tSH-L-R-L-tHH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8Z71|1|B|G|21
8Z71|1|B|A|22
8Z71|1|B|A|23
8Z71|1|B|A|24
8Z71|1|B|G|25
8Z71|1|B|C|26
8Z71|1|B|A|27
*
8Z71|1|B|U|53
8Z71|1|B|U|54
8Z71|1|B|A|55
8Z71|1|B|A|56
8Z71|1|B|G|57
8Z71|1|B|C|58
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL18
- Chain M
- Large ribosomal subunit protein uL5B
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