IL_8Z8U_003
3D structure
- PDB id
- 8Z8U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of LINE-1 ribozyme mutant - C39U
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.71 Å
Loop
- Sequence
- GAGCCCAAC*GGCUAGAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z8U_003 not in the Motif Atlas
- Geometric match to IL_8Z8U_001
- Geometric discrepancy: 0.0001
- The information below is about IL_8Z8U_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21630.1
- Basepair signature
- cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8Z8U|1|A|G|6||||10_554
8Z8U|1|A|A|7||||10_554
8Z8U|1|A|G|8||||10_554
8Z8U|1|A|C|9||||10_554
8Z8U|1|A|C|10||||10_554
8Z8U|1|A|C|11||||10_554
8Z8U|1|A|A|12||||10_554
8Z8U|1|A|A|13||||10_554
8Z8U|1|A|C|14||||10_554
*
8Z8U|1|A|G|29||||10_554
8Z8U|1|A|G|30||||10_554
8Z8U|1|A|C|31||||10_554
8Z8U|1|A|U|32||||10_554
8Z8U|1|A|A|33||||10_554
8Z8U|1|A|G|34||||10_554
8Z8U|1|A|A|35||||10_554
8Z8U|1|A|C|36||||10_554
Current chains
- Chain A
- RNA (41-MER)
Nearby chains
- Chain B
- RNA (41-MER)
Coloring options: