IL_8ZA0_003

3D structure

PDB id

8ZA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of OR4K15 ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

1.96 Å

Loop

Sequence

GGCCAG*CUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZA0_003 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2847

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8ZA0|1|E|G|5
8ZA0|1|E|G|6
8ZA0|1|E|C|7
8ZA0|1|E|C|8
8ZA0|1|E|A|9
8ZA0|1|E|G|10
*
8ZA0|1|F|C|7
8ZA0|1|F|U|8
8ZA0|1|F|C|9
8ZA0|1|F|A|10
8ZA0|1|F|A|11
8ZA0|1|F|C|12

Current chains

Chain E

RNA (5'-R(*UP*CP*UP*GP*GP*GP*CP*CP*AP*GP*GP*CP*AP*GP*G)-3')

Chain F

RNA (5'-R(*UP*CP*UP*GP*GP*GP*CP*CP*AP*GP*GP*CP*AP*GP*G)-3')

Nearby chains

Chain A

RNA (5'-R(*UP*CP*UP*GP*GP*GP*CP*CP*AP*GP*GP*CP*AP*GP*G)-3')