IL_8ZDA_001

3D structure

PDB id

8ZDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a catalytically active state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

ACU*AAUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDA_001 not in the Motif Atlas

Geometric match to IL_7EL1_001

Geometric discrepancy: 0.0464

The information below is about IL_7EL1_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

8ZDA|1|B|A|29
8ZDA|1|B|C|30
8ZDA|1|B|U|31
*
8ZDA|1|B|A|42
8ZDA|1|B|A|43
8ZDA|1|B|U|44
8ZDA|1|B|C|45
8ZDA|1|B|U|46

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9