IL_8ZDB_007

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UACGCA*UGAAA

Length

11 nucleotides

Bulged bases

8ZDB|1|2|C|65, 8ZDB|1|2|C|67

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_007 not in the Motif Atlas

Homologous match to IL_8P9A_379

Geometric discrepancy: 0.1735

The information below is about IL_8P9A_379

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21667.2

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8ZDB|1|2|U|63
8ZDB|1|2|A|64
8ZDB|1|2|C|65
8ZDB|1|2|G|66
8ZDB|1|2|C|67
8ZDB|1|2|A|68
*
8ZDB|1|2|U|81
8ZDB|1|2|G|82
8ZDB|1|2|A|83
8ZDB|1|2|A|84
8ZDB|1|2|A|85

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

Small ribosomal subunit protein eS24