IL_8ZDB_019

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8ZDB|1|2|U|368, 8ZDB|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_019 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.1397

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8ZDB|1|2|U|366
8ZDB|1|2|U|367
8ZDB|1|2|U|368
8ZDB|1|2|C|369
8ZDB|1|2|G|370
8ZDB|1|2|A|371
*
8ZDB|1|2|U|393
8ZDB|1|2|G|394

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17