IL_8ZDB_020

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8ZDB|1|2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_020 not in the Motif Atlas

Homologous match to IL_8C3A_412

Geometric discrepancy: 0.2306

The information below is about IL_8C3A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49054.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8ZDB|1|2|G|411
8ZDB|1|2|G|412
8ZDB|1|2|G|413
*
8ZDB|1|2|C|424
8ZDB|1|2|G|425
8ZDB|1|2|A|426
8ZDB|1|2|U|427
8ZDB|1|2|U|428
8ZDB|1|2|C|429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12