IL_8ZDB_027

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

8ZDB|1|2|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_027 not in the Motif Atlas

Geometric match to IL_7A0S_011

Geometric discrepancy: 0.301

The information below is about IL_7A0S_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8ZDB|1|2|G|535
8ZDB|1|2|A|536
8ZDB|1|2|C|537
*
8ZDB|1|2|G|546
8ZDB|1|2|G|547
8ZDB|1|2|C|548
8ZDB|1|2|C|549

Current chains

Chain 2

18S rRNA

Nearby chains

Chain e

Small ribosomal subunit protein eS30