IL_8ZDB_034

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8ZDB|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_034 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1474

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8ZDB|1|2|G|665
8ZDB|1|2|U|666
8ZDB|1|2|U|667
8ZDB|1|2|A|668
8ZDB|1|2|A|669
8ZDB|1|2|A|670
8ZDB|1|2|A|671
*
8ZDB|1|2|U|1161
8ZDB|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

Small ribosomal subunit protein uS12

Chain a

Small ribosomal subunit protein eS26