IL_8ZDB_062

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACAGGA*UU

Length

8 nucleotides

Bulged bases

8ZDB|1|2|A|1284, 8ZDB|1|2|G|1285, 8ZDB|1|2|G|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_062 not in the Motif Atlas

Geometric match to IL_8C3A_007

Geometric discrepancy: 0.3704

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8ZDB|1|2|A|1282
8ZDB|1|2|C|1283
8ZDB|1|2|A|1284
8ZDB|1|2|G|1285
8ZDB|1|2|G|1286
8ZDB|1|2|A|1287
*
8ZDB|1|2|U|1314
8ZDB|1|2|U|1315

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain f

Ubiquitin