IL_8ZDB_064

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUG*CUCGAU

Length

10 nucleotides

Bulged bases

8ZDB|1|2|G|1312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZDB|1|2|A|1287
8ZDB|1|2|U|1288
8ZDB|1|2|U|1289
8ZDB|1|2|G|1290
*
8ZDB|1|2|C|1309
8ZDB|1|2|U|1310
8ZDB|1|2|C|1311
8ZDB|1|2|G|1312
8ZDB|1|2|A|1313
8ZDB|1|2|U|1314

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain d

Small ribosomal subunit protein uS14

Chain f

Ubiquitin