IL_8ZDB_068
3D structure
- PDB id
- 8ZDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8ZDB|1|2|C|1331, 8ZDB|1|2|U|1494, 8ZDB|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZDB_068 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.1603
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8ZDB|1|2|U|1329
8ZDB|1|2|G|1330
8ZDB|1|2|C|1331
8ZDB|1|2|A|1332
8ZDB|1|2|U|1333
8ZDB|1|2|G|1334
8ZDB|1|2|G|1335
*
8ZDB|1|2|U|1492
8ZDB|1|2|C|1493
8ZDB|1|2|U|1494
8ZDB|1|2|G|1495
8ZDB|1|2|U|1496
8ZDB|1|2|G|1497
8ZDB|1|2|A|1498
8ZDB|1|2|U|1499
8ZDB|1|2|G|1500
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS3
- Chain K
- Small ribosomal subunit protein eS10
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Ubiquitin
- Chain p
- Serine/threonine-protein kinase RIO3
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