IL_8ZDB_071
3D structure
- PDB id
- 8ZDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZDB_071 not in the Motif Atlas
- Homologous match to IL_8P9A_442
- Geometric discrepancy: 0.1351
- The information below is about IL_8P9A_442
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
8ZDB|1|2|U|1347
8ZDB|1|2|G|1348
8ZDB|1|2|G|1349
*
8ZDB|1|2|C|1380
8ZDB|1|2|G|1381
8ZDB|1|2|A|1382
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Small ribosomal subunit protein uS2
- Chain C
- Small ribosomal subunit protein uS5
- Chain D
- Small ribosomal subunit protein uS3
- Chain R
- Small ribosomal subunit protein eS17
- Chain p
- Serine/threonine-protein kinase RIO3
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