IL_8ZDB_073
3D structure
- PDB id
- 8ZDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 8ZDB|1|2|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZDB_073 not in the Motif Atlas
- Geometric match to IL_6JDV_002
- Geometric discrepancy: 0.3293
- The information below is about IL_6JDV_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8ZDB|1|2|C|1395
8ZDB|1|2|A|1396
8ZDB|1|2|U|1397
8ZDB|1|2|G|1398
8ZDB|1|2|C|1399
*
8ZDB|1|2|G|1447
8ZDB|1|2|A|1448
8ZDB|1|2|G|1449
8ZDB|1|2|G|1450
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Q
- Small ribosomal subunit protein uS9
- Chain R
- Small ribosomal subunit protein eS17
- Chain U
- Small ribosomal subunit protein uS10
- Chain g
- Small ribosomal subunit protein RACK1
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