IL_8ZDB_090

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_090 not in the Motif Atlas

Geometric match to IL_5MWI_006

Geometric discrepancy: 0.0907

The information below is about IL_5MWI_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8ZDB|1|2|C|1739
8ZDB|1|2|C|1740
8ZDB|1|2|U|1741
*
8ZDB|1|2|A|1793
8ZDB|1|2|C|1794
8ZDB|1|2|G|1795

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8