IL_8ZDD_015

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_015 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.1823

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8ZDD|1|2|C|188
8ZDD|1|2|U|189
8ZDD|1|2|G|190
8ZDD|1|2|A|191
8ZDD|1|2|C|192
*
8ZDD|1|2|G|207
8ZDD|1|2|G|208
8ZDD|1|2|A|209
8ZDD|1|2|U|210
8ZDD|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8