IL_8ZDD_027

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

8ZDD|1|2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_027 not in the Motif Atlas

Homologous match to IL_8P9A_399

Geometric discrepancy: 0.3252

The information below is about IL_8P9A_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8ZDD|1|2|A|529
8ZDD|1|2|U|530
*
8ZDD|1|2|A|554
8ZDD|1|2|A|555
8ZDD|1|2|U|556

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain p

Serine/threonine-protein kinase RIO3