IL_8ZDD_041
3D structure
- PDB id
- 8ZDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZDD_041 not in the Motif Atlas
- Homologous match to IL_8C3A_503
- Geometric discrepancy: 0.3764
- The information below is about IL_8C3A_503
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44416.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8ZDD|1|2|G|807
8ZDD|1|2|A|808
8ZDD|1|2|A|809
8ZDD|1|2|A|810
8ZDD|1|2|A|811
8ZDD|1|2|A|812
8ZDD|1|2|A|813
8ZDD|1|2|U|814
8ZDD|1|2|U|815
*
8ZDD|1|2|A|849
8ZDD|1|2|C|850
8ZDD|1|2|C|851
8ZDD|1|2|G|852
8ZDD|1|2|C|853
8ZDD|1|2|A|854
8ZDD|1|2|G|855
8ZDD|1|2|C|856
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein eS4, X isoform
- Chain J
- Small ribosomal subunit protein uS4
- Chain L
- Small ribosomal subunit protein uS17
- Chain W
- Small ribosomal subunit protein uS8
Coloring options: