IL_8ZDD_044

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_044 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.1401

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8ZDD|1|2|A|922
8ZDD|1|2|G|923
*
8ZDD|1|2|C|1019
8ZDD|1|2|A|1020
8ZDD|1|2|U|1021
8ZDD|1|2|U|1022

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS15

Chain W

Small ribosomal subunit protein uS8

Chain b

Small ribosomal subunit protein eS27