IL_8ZDD_045

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8ZDD|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_045 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2529

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8ZDD|1|2|G|925
8ZDD|1|2|A|926
*
8ZDD|1|2|U|1015
8ZDD|1|2|U|1016
8ZDD|1|2|U|1017

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

Small ribosomal subunit protein eS7

Chain N

Small ribosomal subunit protein uS15

Chain W

Small ribosomal subunit protein uS8

Chain b

Small ribosomal subunit protein eS27