IL_8ZDD_052
3D structure
- PDB id
- 8ZDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8ZDD|1|2|C|1153, 8ZDD|1|2|U|1155, 8ZDD|1|2|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZDD_052 not in the Motif Atlas
- Homologous match to IL_8P9A_425
- Geometric discrepancy: 0.1554
- The information below is about IL_8P9A_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8ZDD|1|2|C|1091
8ZDD|1|2|G|1092
8ZDD|1|2|A|1093
*
8ZDD|1|2|U|1152
8ZDD|1|2|C|1153
8ZDD|1|2|U|1154
8ZDD|1|2|U|1155
8ZDD|1|2|U|1156
8ZDD|1|2|G|1157
8ZDD|1|2|G|1158
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS5
- Chain L
- Small ribosomal subunit protein uS17
- Chain N
- Small ribosomal subunit protein uS15
- Chain V
- Small ribosomal subunit protein eS21
- Chain W
- Small ribosomal subunit protein uS8
- Chain X
- Small ribosomal subunit protein uS12
- Chain b
- Small ribosomal subunit protein eS27
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