IL_8ZDD_055

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_055 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.2548

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8ZDD|1|2|G|1108
8ZDD|1|2|C|1109
8ZDD|1|2|G|1110
*
8ZDD|1|2|C|1123
8ZDD|1|2|C|1124

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain B

Small ribosomal subunit protein eS1

Chain R

Small ribosomal subunit protein eS17

Chain b

Small ribosomal subunit protein eS27