IL_8ZDD_068
3D structure
- PDB id
- 8ZDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 8ZDD|1|2|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZDD_068 not in the Motif Atlas
- Homologous match to IL_8C3A_458
- Geometric discrepancy: 0.1798
- The information below is about IL_8C3A_458
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
8ZDD|1|2|C|1337
8ZDD|1|2|G|1338
*
8ZDD|1|2|C|1488
8ZDD|1|2|A|1489
8ZDD|1|2|G|1490
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS3
- Chain Q
- Small ribosomal subunit protein uS9
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain p
- Serine/threonine-protein kinase RIO3
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
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