IL_8ZDD_072

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_072 not in the Motif Atlas

Geometric match to IL_8AF0_002

Geometric discrepancy: 0.189

The information below is about IL_8AF0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8ZDD|1|2|G|1406
8ZDD|1|2|U|1407
8ZDD|1|2|U|1408
*
8ZDD|1|2|A|1438
8ZDD|1|2|A|1439
8ZDD|1|2|C|1440

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain U

Small ribosomal subunit protein uS10