IL_8ZDD_073

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

8ZDD|1|2|G|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_073 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.3147

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8ZDD|1|2|C|1412
8ZDD|1|2|G|1413
*
8ZDD|1|2|C|1427
8ZDD|1|2|G|1428
8ZDD|1|2|G|1429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain T

Small ribosomal subunit protein eS19