IL_8ZDD_074

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_074 not in the Motif Atlas

Geometric match to IL_3TD0_001

Geometric discrepancy: 0.1224

The information below is about IL_3TD0_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8ZDD|1|2|A|1537
8ZDD|1|2|C|1538
8ZDD|1|2|U|1539
*
8ZDD|1|2|A|1594
8ZDD|1|2|U|1595
8ZDD|1|2|U|1596

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain Z

Small ribosomal subunit protein eS25