IL_8ZDD_077

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_077 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1578

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8ZDD|1|2|G|1604
8ZDD|1|2|G|1605
8ZDD|1|2|G|1606
8ZDD|1|2|A|1607
8ZDD|1|2|U|1608
8ZDD|1|2|C|1609
8ZDD|1|2|G|1610
*
8ZDD|1|2|C|1629
8ZDD|1|2|A|1630
8ZDD|1|2|U|1631
8ZDD|1|2|G|1632
8ZDD|1|2|A|1633
8ZDD|1|2|A|1634
8ZDD|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19