IL_8ZFF_003

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

8ZFF|1|A|C|48, 8ZFF|1|A|A|50, 8ZFF|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_003 not in the Motif Atlas

Geometric match to IL_8B0X_003

Geometric discrepancy: 0.0644

The information below is about IL_8B0X_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8ZFF|1|A|C|47
8ZFF|1|A|C|48
8ZFF|1|A|U|49
8ZFF|1|A|A|50
8ZFF|1|A|A|51
8ZFF|1|A|C|52
*
8ZFF|1|A|G|359
8ZFF|1|A|G|360
8ZFF|1|A|G|361

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12