IL_8ZFF_021

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8ZFF|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_021 not in the Motif Atlas

Geometric match to IL_8B0X_021

Geometric discrepancy: 0.0665

The information below is about IL_8B0X_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8ZFF|1|A|G|446
8ZFF|1|A|G|447
8ZFF|1|A|A|448
8ZFF|1|A|G|449
8ZFF|1|A|G|450
*
8ZFF|1|A|C|483
8ZFF|1|A|G|484
8ZFF|1|A|U|485
8ZFF|1|A|U|486
8ZFF|1|A|A|487
8ZFF|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

Small ribosomal subunit protein bS16