IL_8ZFF_033
3D structure
- PDB id
- 8ZFF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFF_033 not in the Motif Atlas
- Homologous match to IL_6CZR_409
- Geometric discrepancy: 0.1316
- The information below is about IL_6CZR_409
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8ZFF|1|A|A|673
8ZFF|1|A|G|674
8ZFF|1|A|A|675
8ZFF|1|A|A|676
8ZFF|1|A|U|677
*
8ZFF|1|A|G|713
8ZFF|1|A|G|714
8ZFF|1|A|A|715
8ZFF|1|A|A|716
8ZFF|1|A|U|717
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein bS6, fully modified isoform
- Chain K
- Small ribosomal subunit protein uS11
- Chain R
- Small ribosomal subunit protein bS18
- Chain U
- Small ribosomal subunit protein bS21
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: