IL_8ZFF_071

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_071 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.052

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8ZFF|1|a|C|239
8ZFF|1|a|C|240
8ZFF|1|a|A|241
8ZFF|1|a|G|242
8ZFF|1|a|U|243
8ZFF|1|a|A|244
8ZFF|1|a|G|245
*
8ZFF|1|a|C|253
8ZFF|1|a|G|254
8ZFF|1|a|A|255
8ZFF|1|a|A|256
8ZFF|1|a|C|257
8ZFF|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain k

Large ribosomal subunit protein uL15