IL_8ZFF_073

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_073 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.2385

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8ZFF|1|a|C|274
8ZFF|1|a|C|275
8ZFF|1|a|U|276
8ZFF|1|a|G|277
8ZFF|1|a|A|278
8ZFF|1|a|A|279
8ZFF|1|a|U|280
8ZFF|1|a|C|281
*
8ZFF|1|a|G|359
8ZFF|1|a|U|360
8ZFF|1|a|G|361
8ZFF|1|a|A|362
8ZFF|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains