IL_8ZFF_103
3D structure
- PDB id
- 8ZFF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFF_103 not in the Motif Atlas
- Geometric match to IL_8B0X_103
- Geometric discrepancy: 0.0807
- The information below is about IL_8B0X_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8ZFF|1|a|G|1038
8ZFF|1|a|A|1039
8ZFF|1|a|A|1040
8ZFF|1|a|G|1041
*
8ZFF|1|a|C|1114
8ZFF|1|a|G|1115
8ZFF|1|a|G|1116
8ZFF|1|a|C|1117
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain g
- Large ribosomal subunit protein uL6
- Chain l
- Large ribosomal subunit protein uL16
- Chain u
- Large ribosomal subunit protein bL25
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