IL_8ZFF_145

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8ZFF|1|a|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_145 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.1257

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8ZFF|1|a|U|2081
8ZFF|1|a|A|2082
8ZFF|1|a|G|2083
*
8ZFF|1|a|U|2236
8ZFF|1|a|G|2237
8ZFF|1|a|G|2238
8ZFF|1|a|G|2239

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain w

Large ribosomal subunit protein bL28