IL_8ZFG_119

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_119 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.5278

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8ZFG|1|a|U|1474
8ZFG|1|a|G|1475
8ZFG|1|a|U|1476
8ZFG|1|a|A|1477
8ZFG|1|a|G|1478
*
8ZFG|1|a|U|1513
8ZFG|1|a|G|1514
8ZFG|1|a|A|1515
8ZFG|1|a|G|1516
8ZFG|1|a|G|1517

Current chains

Chain a

23S rRNA

Nearby chains