IL_8ZFG_126
3D structure
- PDB id
- 8ZFG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.68 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 8ZFG|1|a|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFG_126 not in the Motif Atlas
- Geometric match to IL_8B0X_180
- Geometric discrepancy: 0.0443
- The information below is about IL_8B0X_180
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8ZFG|1|a|G|1666
8ZFG|1|a|G|1667
8ZFG|1|a|A|1668
8ZFG|1|a|A|1669
8ZFG|1|a|C|1670
8ZFG|1|a|U|1671
8ZFG|1|a|A|1672
8ZFG|1|a|G|1673
8ZFG|1|a|G|1674
*
8ZFG|1|a|C|1990
8ZFG|1|a|U|1991
8ZFG|1|a|G|1992
8ZFG|1|a|U|1993
8ZFG|1|a|C|1994
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: