IL_8ZFG_127

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

8ZFG|1|a|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_127 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.1108

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8ZFG|1|a|A|1669
8ZFG|1|a|C|1670
8ZFG|1|a|U|1671
8ZFG|1|a|A|1672
8ZFG|1|a|G|1673
8ZFG|1|a|G|1674
*
8ZFG|1|a|C|1990
8ZFG|1|a|U|1991
8ZFG|1|a|G|1992
8ZFG|1|a|U|1993

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14