IL_8ZFI_001
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAC*GUUA
- Length
- 9 nucleotides
- Bulged bases
- 8ZFI|1|A|G|31
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_001 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.2509
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8ZFI|1|A|U|30
8ZFI|1|A|G|31
8ZFI|1|A|A|32
8ZFI|1|A|A|33
8ZFI|1|A|C|34
*
8ZFI|1|A|G|550
8ZFI|1|A|U|551
8ZFI|1|A|U|552
8ZFI|1|A|A|553
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: