IL_8ZFI_013

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_013 not in the Motif Atlas

Geometric match to IL_4LFB_012

Geometric discrepancy: 0.3025

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8ZFI|1|A|U|249
8ZFI|1|A|A|250
8ZFI|1|A|G|251
8ZFI|1|A|U|252
*
8ZFI|1|A|A|274
8ZFI|1|A|G|275

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17