IL_8ZFI_017

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

8ZFI|1|A|A|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_017 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.368

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8ZFI|1|A|U|409
8ZFI|1|A|G|410
8ZFI|1|A|A|411
8ZFI|1|A|A|412
8ZFI|1|A|G|413
8ZFI|1|A|A|414
8ZFI|1|A|A|415
8ZFI|1|A|G|416
*
8ZFI|1|A|U|427
8ZFI|1|A|G|428
8ZFI|1|A|U|429
8ZFI|1|A|A|430
8ZFI|1|A|A|431
8ZFI|1|A|A|432
8ZFI|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4