IL_8ZFI_056

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_056 not in the Motif Atlas

Geometric match to IL_8CRE_465

Geometric discrepancy: 0.2401

The information below is about IL_8CRE_465

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8ZFI|1|A|C|1303
8ZFI|1|A|G|1304
8ZFI|1|A|G|1305
8ZFI|1|A|A|1306
8ZFI|1|A|U|1307
8ZFI|1|A|U|1308
*
8ZFI|1|A|A|1329
8ZFI|1|A|U|1330
8ZFI|1|A|G|1331
8ZFI|1|A|A|1332
8ZFI|1|A|A|1333
8ZFI|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13