IL_8ZFI_071
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_071 not in the Motif Atlas
- Geometric match to IL_5J7L_245
- Geometric discrepancy: 0.1169
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZFI|1|b|G|24
8ZFI|1|b|U|25
8ZFI|1|b|G|26
8ZFI|1|b|G|27
8ZFI|1|b|A|28
8ZFI|1|b|U|29
8ZFI|1|b|G|30
*
8ZFI|1|b|C|510
8ZFI|1|b|U|511
8ZFI|1|b|G|512
8ZFI|1|b|A|513
8ZFI|1|b|A|514
8ZFI|1|b|A|515
8ZFI|1|b|C|516
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain r
- 50S ribosomal protein L20
- Chain t
- 50S ribosomal protein L22
- Chain z
- eRAP-NC
Coloring options: