IL_8ZFI_082

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGU*AUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_082 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3693

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8ZFI|1|b|G|283
8ZFI|1|b|U|284
8ZFI|1|b|G|285
8ZFI|1|b|U|286
*
8ZFI|1|b|A|354
8ZFI|1|b|U|355
8ZFI|1|b|G|356
8ZFI|1|b|C|357

Current chains

Chain b

RNA (2903-MER)

Nearby chains