IL_8ZFI_084
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 8ZFI|1|b|A|504, 8ZFI|1|b|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_084 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.1055
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
8ZFI|1|b|G|481
8ZFI|1|b|A|482
8ZFI|1|b|A|483
8ZFI|1|b|C|484
*
8ZFI|1|b|G|496
8ZFI|1|b|A|497
8ZFI|1|b|G|498
8ZFI|1|b|U|499
8ZFI|1|b|G|500
8ZFI|1|b|A|501
8ZFI|1|b|A|502
8ZFI|1|b|A|503
8ZFI|1|b|A|504
8ZFI|1|b|A|505
8ZFI|1|b|G|506
8ZFI|1|b|A|507
8ZFI|1|b|A|508
8ZFI|1|b|C|509
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain t
- 50S ribosomal protein L22
- Chain v
- 50S ribosomal protein L24
- Chain z
- eRAP-NC
Coloring options: