IL_8ZFI_086
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_086 not in the Motif Atlas
- Geometric match to IL_4WF9_017
- Geometric discrepancy: 0.16
- The information below is about IL_4WF9_017
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 78
Unit IDs
8ZFI|1|b|C|564
8ZFI|1|b|C|565
8ZFI|1|b|U|566
*
8ZFI|1|b|A|575
8ZFI|1|b|U|576
8ZFI|1|b|G|577
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain m
- 50S ribosomal protein L15
- Chain r
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L21
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