IL_8ZFI_087

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAU*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_087 not in the Motif Atlas

Geometric match to IL_4KQ0_002

Geometric discrepancy: 0.1686

The information below is about IL_4KQ0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8ZFI|1|b|U|591
8ZFI|1|b|A|592
8ZFI|1|b|U|593
*
8ZFI|1|b|G|664
8ZFI|1|b|U|665
8ZFI|1|b|A|666

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 7

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain m

50S ribosomal protein L15